Variant report

Variant	rs10819642
Chromosome Location	chr9:101976992-101976993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101974493..101976860-chr9:101976887..101979986,3	MCF-7	breast:
2	chr9:101969682..101971688-chr9:101974489..101977058,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10114715	0.86[JPT][hapmap]
rs10819641	0.82[JPT][hapmap]
rs10988740	0.86[JPT][hapmap]
rs10988743	0.85[JPT][hapmap]
rs10988744	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs10988746	0.91[JPT][hapmap]
rs10988749	0.82[TSI][hapmap]
rs11545137	0.87[EUR][1000 genomes]
rs12336513	0.82[JPT][hapmap]
rs12345762	0.82[JPT][hapmap]
rs13440104	0.91[JPT][hapmap]
rs16918352	0.81[JPT][hapmap]
rs17725470	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs17725597	0.83[EUR][1000 genomes]
rs17725608	0.83[EUR][1000 genomes]
rs17725644	1.00[ASW][hapmap];0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs17787503	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs17787533	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs35626507	0.89[EUR][1000 genomes]
rs3780616	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs41274646	0.89[EUR][1000 genomes]
rs41274648	0.87[EUR][1000 genomes]
rs7031236	1.00[YRI][hapmap]
rs7872043	0.90[JPT][hapmap]
rs912248	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101964000-101982000	Weak transcription	Brain Substantia Nigra	brain
2	chr9:101964200-101981800	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:101969600-101977400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:101971400-101980200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:101971600-101977400	Weak transcription	NHLF	lung
6	chr9:101972400-101980200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr9:101973000-101980200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:101973200-101980200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:101973200-101982000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:101973400-101977600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr9:101973400-101980200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:101974000-101977000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:101974000-101977400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:101974000-101977400	Weak transcription	Fetal Brain Female	brain
15	chr9:101974000-101977600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:101974000-101977800	Weak transcription	HSMMtube	muscle
17	chr9:101974000-101978000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:101974200-101977400	Weak transcription	Thymus	Thymus
19	chr9:101974200-101977600	Weak transcription	A549	lung
20	chr9:101974400-101977000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr9:101974400-101977600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr9:101974400-101977800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:101974400-101977800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr9:101974400-101978200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:101974400-101983200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr9:101974600-101977600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:101974600-101977600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:101974600-101978200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:101974600-101980200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr9:101974600-101983400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:101974800-101977400	Weak transcription	Liver	Liver
32	chr9:101974800-101977400	Weak transcription	NHEK	skin
33	chr9:101974800-101977600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:101974800-101977600	Weak transcription	GM12878-XiMat	blood
35	chr9:101974800-101980200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:101974800-101980200	Weak transcription	Placenta	Placenta
37	chr9:101975000-101977400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:101975000-101977400	Weak transcription	Fetal Thymus	thymus
39	chr9:101975000-101977600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:101975000-101977600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:101975000-101979600	Weak transcription	Brain Germinal Matrix	brain
42	chr9:101975000-101980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:101975000-101980200	Weak transcription	Pancreas	Pancrea
44	chr9:101975000-101980200	Weak transcription	Spleen	Spleen
45	chr9:101975000-101980400	Weak transcription	Esophagus	oesophagus
46	chr9:101975200-101980200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:101975200-101980200	Weak transcription	Fetal Intestine Small	intestine
48	chr9:101975200-101980200	Weak transcription	Right Atrium	heart
49	chr9:101975200-101980400	Weak transcription	Right Ventricle	heart
50	chr9:101975400-101977200	Weak transcription	Psoas Muscle	Psoas

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