Variant report

Variant	rs141316878
Chromosome Location	chr19:21701667-21701668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv510759	chr19:21664791-21723191	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2762028	chr19:21685778-21755476	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv963024	chr19:21686690-21722618	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1059328	chr19:21691123-21775948	Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv3369003	chr19:21701297-21701726	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21689200-21702000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:21689200-21702000	Weak transcription	Stomach Mucosa	stomach
3	chr19:21689400-21702000	Weak transcription	Left Ventricle	heart
4	chr19:21689400-21702000	Weak transcription	Right Ventricle	heart
5	chr19:21689600-21702000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:21691200-21702000	Weak transcription	Colon Smooth Muscle	Colon
7	chr19:21691400-21702000	Weak transcription	Ovary	ovary
8	chr19:21695200-21702000	Weak transcription	Spleen	Spleen
9	chr19:21696800-21702000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr19:21697000-21702000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr19:21698000-21702000	Weak transcription	Psoas Muscle	Psoas
12	chr19:21698400-21710800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr19:21699400-21705400	ZNF genes & repeats	Dnd41	blood
14	chr19:21699600-21707600	ZNF genes & repeats	Brain Germinal Matrix	brain
15	chr19:21699600-21720800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:21699600-21727600	ZNF genes & repeats	Liver	Liver
17	chr19:21700600-21707800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
18	chr19:21700600-21707800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr19:21700800-21702000	Weak transcription	Brain Angular Gyrus	brain
20	chr19:21700800-21702000	Weak transcription	NH-A	brain
21	chr19:21700800-21702400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
22	chr19:21700800-21703400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:21700800-21704000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
24	chr19:21700800-21704400	ZNF genes & repeats	Primary T cells from cord blood	blood
25	chr19:21700800-21705400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr19:21700800-21706600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr19:21700800-21706800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
28	chr19:21700800-21707200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr19:21700800-21711000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr19:21701000-21703000	ZNF genes & repeats	Fetal Brain Male	brain
31	chr19:21701000-21703200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
32	chr19:21701000-21703200	ZNF genes & repeats	Fetal Intestine Large	intestine
33	chr19:21701000-21704200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chr19:21701000-21704600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
35	chr19:21701000-21705200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr19:21701000-21706200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
37	chr19:21701000-21707000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr19:21701000-21707800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr19:21701000-21733400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr19:21701200-21702800	ZNF genes & repeats	Fetal Heart	heart
41	chr19:21701200-21702800	ZNF genes & repeats	HSMMtube	muscle
42	chr19:21701200-21703200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:21701200-21703200	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr19:21701200-21703400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
45	chr19:21701200-21703400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr19:21701400-21701800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr19:21701400-21702200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr19:21701400-21703000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:21701400-21703000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr19:21701400-21703000	ZNF genes & repeats	Esophagus	oesophagus

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