Variant report

Variant	rs1416454
Chromosome Location	chr10:19271651-19271652
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10740828	0.94[EUR][1000 genomes]
rs10763729	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10763750	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10763751	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10763752	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10763753	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10763754	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10826664	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10826665	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10826690	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10826691	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10826735	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10826742	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11007659	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11007830	0.89[EUR][1000 genomes]
rs12770186	0.82[EUR][1000 genomes]
rs1329228	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1329229	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1329230	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1329231	0.83[ASN][1000 genomes]
rs1339046	0.92[EUR][1000 genomes]
rs1339053	0.88[EUR][1000 genomes]
rs1339055	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1361294	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1416455	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1416462	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1416463	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538461	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538462	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538463	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538464	0.94[EUR][1000 genomes]
rs1887923	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1934052	0.87[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2185201	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2686653	0.82[EUR][1000 genomes]
rs2789307	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2813777	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255444	0.94[EUR][1000 genomes]
rs4311959	0.89[EUR][1000 genomes]
rs4326693	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4522068	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4619042	0.94[EUR][1000 genomes]
rs4633353	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56058325	0.83[EUR][1000 genomes]
rs6481617	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7070237	0.84[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079204	0.84[EUR][1000 genomes]
rs7079419	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7079871	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7083085	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7085754	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090989	0.85[EUR][1000 genomes]
rs7091246	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7095232	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7097875	0.93[EUR][1000 genomes]
rs7100348	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7906865	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7907800	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7907812	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7910929	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7911092	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7913804	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7917242	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550124	chr10:19205103-19307536	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466763	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv470925	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19267800-19273200	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19269000-19273200	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19269200-19273400	Weak transcription	Fetal Lung	lung

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