Variant report

Variant	rs56058325
Chromosome Location	chr10:19312541-19312542
allele	-/A/AA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10740828	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10826735	0.80[EUR][1000 genomes]
rs10826742	0.81[EUR][1000 genomes]
rs11007830	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12770186	0.84[EUR][1000 genomes]
rs1339046	0.91[EUR][1000 genomes]
rs1339053	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1339055	0.82[EUR][1000 genomes]
rs1361294	0.85[EUR][1000 genomes]
rs1416454	0.83[EUR][1000 genomes]
rs1416455	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1934052	0.83[EUR][1000 genomes]
rs2185201	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2789307	0.81[EUR][1000 genomes]
rs2813777	0.83[EUR][1000 genomes]
rs4311959	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4522068	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7070237	0.82[EUR][1000 genomes]
rs7079204	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7079871	0.80[EUR][1000 genomes]
rs7085754	0.82[EUR][1000 genomes]
rs7090989	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7091246	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7095232	0.80[EUR][1000 genomes]
rs7100348	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv466763	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv470925	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv2761576	chr10:19290710-19323357	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv1040087	chr10:19290710-19323913	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1039061	chr10:19301914-19334758	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19312200-19313200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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