Variant report

Variant	rs7100348
Chromosome Location	chr10:19306148-19306149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10740828	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10763729	0.82[EUR][1000 genomes]
rs10763750	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10763751	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10763752	0.85[EUR][1000 genomes]
rs10763753	0.85[EUR][1000 genomes]
rs10763754	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10826664	0.82[EUR][1000 genomes]
rs10826665	0.82[EUR][1000 genomes]
rs10826690	0.82[EUR][1000 genomes]
rs10826691	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10826735	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10826742	0.93[EUR][1000 genomes]
rs11007659	0.82[EUR][1000 genomes]
rs11007830	0.86[EUR][1000 genomes]
rs1329228	0.82[EUR][1000 genomes]
rs1329229	0.81[EUR][1000 genomes]
rs1339046	0.88[EUR][1000 genomes]
rs1339053	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1339055	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1361294	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1416454	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1416455	0.88[EUR][1000 genomes]
rs1416462	0.89[EUR][1000 genomes]
rs1416463	0.89[EUR][1000 genomes]
rs1538461	0.89[EUR][1000 genomes]
rs1538462	0.89[EUR][1000 genomes]
rs1538463	0.89[EUR][1000 genomes]
rs1538464	0.89[EUR][1000 genomes]
rs1887923	0.82[EUR][1000 genomes]
rs1934052	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2185201	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2686653	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2789307	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2813777	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2813786	0.82[EUR][1000 genomes]
rs4255444	0.89[EUR][1000 genomes]
rs4311959	0.86[EUR][1000 genomes]
rs4326693	0.89[EUR][1000 genomes]
rs4522068	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4619042	0.89[EUR][1000 genomes]
rs4633353	0.89[EUR][1000 genomes]
rs56058325	0.86[EUR][1000 genomes]
rs6481617	0.82[EUR][1000 genomes]
rs7070237	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7079204	0.88[EUR][1000 genomes]
rs7079419	0.82[EUR][1000 genomes]
rs7079871	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7083085	0.81[EUR][1000 genomes]
rs7085754	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7090989	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7091246	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7095232	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7097875	0.89[EUR][1000 genomes]
rs7906865	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7907800	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7907812	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7910929	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7911092	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7913804	0.81[EUR][1000 genomes]
rs7917242	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550124	chr10:19205103-19307536	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466763	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv470925	chr10:19205103-19334637	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv947593	chr10:19205323-19340510	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3493336	chr10:19216608-19378036	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3493337	chr10:19216667-19377987	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv894917	chr10:19259024-19463367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2761576	chr10:19290710-19323357	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv1040087	chr10:19290710-19323913	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv528472	chr10:19296750-19385248	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1039061	chr10:19301914-19334758	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19304000-19309400	Weak transcription	Placenta	Placenta

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