Variant report

Variant	rs1417734
Chromosome Location	chr13:95327253-95327254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95326692..95327475-chr13:95602076..95602823,2	MCF-7	breast:
2	chr13:95272632..95273235-chr13:95327081..95327583,2	MCF-7	breast:
3	chr13:95326845..95328787-chr13:95329550..95331542,2	MCF-7	breast:
4	chr13:95315797..95318653-chr13:95326194..95328444,2	K562	blood:
5	chr13:95325863..95327596-chr13:95357586..95359779,2	MCF-7	breast:
6	chr13:95326923..95327771-chr13:95808501..95809050,2	MCF-7	breast:
7	chr13:95326796..95329231-chr13:95330284..95332050,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12385866	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1417733	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417735	0.90[ASN][1000 genomes]
rs1535648	0.89[ASN][1000 genomes]
rs1535649	0.89[ASN][1000 genomes]
rs17181892	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1998502	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2093689	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4619266	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55736178	0.92[ASN][1000 genomes]
rs61965636	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61965639	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7318373	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7982581	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7985588	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7994578	0.89[ASN][1000 genomes]
rs9556408	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556409	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9556410	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561654	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561655	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561656	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561657	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561660	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561661	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561662	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9584244	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95325600-95330600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95325800-95327600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr13:95325800-95327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:95325800-95330600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95326200-95327600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:95326400-95335600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95326600-95329000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:95327000-95329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:95327000-95329800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:95327200-95327400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:95327200-95335600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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