Variant report

Variant	rs17181892
Chromosome Location	chr13:95316196-95316197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95305311..95307485-chr13:95315506..95318389,2	K562	blood:
2	chr13:95315797..95318653-chr13:95326194..95328444,2	K562	blood:
3	chr13:95305634..95309523-chr13:95312695..95317006,4	K562	blood:
4	chr13:95313332..95316230-chr13:95330439..95332251,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12385866	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417733	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1417734	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1417735	0.90[ASN][1000 genomes]
rs1535648	0.81[ASN][1000 genomes]
rs1535649	0.81[ASN][1000 genomes]
rs1998502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2093689	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs4619266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55736178	0.83[ASN][1000 genomes]
rs61965636	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61965639	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7318373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982581	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs7985588	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7994578	0.81[ASN][1000 genomes]
rs9556408	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556409	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9556410	0.82[ASN][1000 genomes]
rs9561654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561656	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561657	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561660	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9561661	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9561662	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9584244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95310000-95318000	Weak transcription	NHEK	skin
2	chr13:95312600-95317800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:95313400-95317400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:95314600-95316200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr13:95314800-95316600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95314800-95319200	Weak transcription	Brain Hippocampus Middle	brain
7	chr13:95315200-95316200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
8	chr13:95315200-95316400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr13:95315200-95318800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:95315600-95317200	Enhancers	K562	blood

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