Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95325863..95327596-chr13:95357586..95359779,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12385866	0.90[ASN][1000 genomes]
rs1417733	0.90[ASN][1000 genomes]
rs1417734	0.90[ASN][1000 genomes]
rs1535648	0.81[ASN][1000 genomes]
rs1535649	0.81[ASN][1000 genomes]
rs17181892	0.90[ASN][1000 genomes]
rs1998502	0.92[ASN][1000 genomes]
rs2093689	0.95[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4619266	0.95[ASN][1000 genomes]
rs55736178	0.83[ASN][1000 genomes]
rs61965636	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7318373	0.90[ASN][1000 genomes]
rs7982581	0.91[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs7985588	0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs7994578	0.81[ASN][1000 genomes]
rs9556408	0.92[ASN][1000 genomes]
rs9556409	0.82[ASN][1000 genomes]
rs9556410	0.82[ASN][1000 genomes]
rs9561654	0.90[ASN][1000 genomes]
rs9561655	0.90[ASN][1000 genomes]
rs9561656	0.92[ASN][1000 genomes]
rs9561657	0.92[ASN][1000 genomes]
rs9561660	0.95[ASN][1000 genomes]
rs9561661	0.92[ASN][1000 genomes]
rs9561662	0.83[ASN][1000 genomes]
rs9584244	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95325600-95330600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95325800-95326400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:95325800-95327200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:95325800-95327600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:95325800-95327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr13:95325800-95330600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95326000-95326400	Enhancers	HSMMtube	muscle
8	chr13:95326000-95326600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:95326000-95326800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr13:95326000-95327000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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