Variant report

Variant	rs1419420
Chromosome Location	chr7:127017661-127017662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127015806..127018202-chr7:127031905..127033944,2	MCF-7	breast:
2	chr7:127016784..127019560-chr7:127024894..127027615,3	MCF-7	breast:
3	chr7:127014796..127019134-chr7:127031317..127035078,8	MCF-7	breast:
4	chr13:47369560..47372383-chr7:127016119..127018399,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048405	Chromatin interaction
ENSG00000139684	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10226106	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235028	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249162	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249166	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10253737	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254399	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255062	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10263603	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10279882	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1057454	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10954148	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563347	0.96[CEU][hapmap]
rs11563470	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1361938	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1361940	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419392	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1419394	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1419395	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1419405	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1419418	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1419419	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419421	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419423	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17866417	0.96[CEU][hapmap]
rs1946107	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1946108	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2027952	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106181	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2269728	0.88[CEU][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2269729	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2285338	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2402859	0.96[CEU][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28729203	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4728067	0.85[CEU][hapmap]
rs4728068	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731352	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731353	0.96[CEU][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731354	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731355	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731356	0.92[CEU][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731357	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731358	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731359	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467120	0.81[CEU][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6467122	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6467123	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467124	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67076804	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957320	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6962137	0.96[CEU][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6973862	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978090	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6979232	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs712696	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777556	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7786199	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7811565	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs951992	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656363	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9791822	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791825	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986584	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987384	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126987800-127020600	Weak transcription	Spleen	Spleen
2	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
5	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
6	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
7	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:126994000-127019800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr7:126995400-127022600	Strong transcription	Dnd41	blood
10	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
12	chr7:126998200-127020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:126999200-127018000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:126999600-127023200	Weak transcription	Small Intestine	intestine
17	chr7:127000200-127019600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:127001600-127023200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
21	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
22	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
24	chr7:127001600-127031400	Weak transcription	Gastric	stomach
25	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
27	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
28	chr7:127004600-127017800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:127007000-127018200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:127007600-127017800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:127007800-127017800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:127008800-127020000	Strong transcription	K562	blood
33	chr7:127009600-127019800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:127011400-127017800	Strong transcription	Hela-S3	cervix
36	chr7:127011600-127018200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:127011800-127023200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:127012800-127020600	Strong transcription	Primary B cells from peripheral blood	blood
40	chr7:127013200-127018200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
42	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr7:127014600-127022600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr7:127014600-127027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:127014800-127023400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr7:127015000-127019000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:127015000-127020200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:127015000-127020600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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