Variant report

Variant	rs987384
Chromosome Location	chr7:127033948-127033949
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:127031369-127034005	K562	blood:	n/a	n/a
2	MXI1	chr7:127031480-127034195	IMR90	lung:	n/a	chr7:127033388-127033397
3	MAX	chr7:127033767-127034173	H1-hESC	embryonic stem cell:	n/a	n/a
4	EGR1	chr7:127033844-127034118	K562	blood:	n/a	chr7:127033991-127034005
5	E2F6	chr7:127031655-127034149	H1-hESC	embryonic stem cell:	n/a	chr7:127032277-127032286 chr7:127033560-127033569 chr7:127032340-127032350 chr7:127032431-127032441 chr7:127032504-127032514
6	MAX	chr7:127031933-127034082	SK-N-SH	brain:	n/a	chr7:127033389-127033398 chr7:127032026-127032035 chr7:127033387-127033400 chr7:127032671-127032681 chr7:127033388-127033399
7	NRF1	chr7:127031331-127034152	SK-N-SH	brain:	n/a	chr7:127032850-127032861 chr7:127032867-127032878 chr7:127032391-127032400
8	EGR1	chr7:127033886-127034079	GM12878	blood:	n/a	chr7:127033991-127034005
9	MXI1	chr7:127030780-127034451	SK-N-SH	brain:	n/a	chr7:127033388-127033397

No.	Distal block	Cell Line	Cell type
1	chr7:127028627..127034604-chr7:127290902..127294330,10	K562	blood:
2	chr7:126892951..126894660-chr7:127031651..127034423,2	MCF-7	breast:
3	chr7:127030999..127034277-chr7:127071570..127073569,4	K562	blood:
4	chr7:127029920..127034279-chr7:127291168..127294285,4	MCF-7	breast:
5	chr7:126985549..126992875-chr7:127029251..127034121,12	K562	blood:
6	chr7:126980512..126983635-chr7:127032976..127036223,3	K562	blood:
7	chr7:127029926..127034103-chr7:127290516..127296284,10	K562	blood:
8	chr7:127030656..127034603-chr7:127225190..127230310,7	MCF-7	breast:

Variant related genes	Relation type
ZNF800	TF binding region
ENSG00000197157	Chromatin interaction
ENSG00000224138	Chromatin interaction
ENSG00000004059	Chromatin interaction
ENSG00000240790	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000179562	Chromatin interaction
ENSG00000179603	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10226106	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10235028	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249162	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10249166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10253737	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10254399	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10255062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279882	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1057454	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11563470	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1361938	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1361940	0.96[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419392	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419394	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419395	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419405	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419418	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1419419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419420	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17866417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1946107	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946108	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027952	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2106181	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2269728	0.88[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2269729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402859	0.96[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28729203	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4728067	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4728068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731352	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731353	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731356	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731359	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467120	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6467122	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6467123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67076804	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6957320	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6962137	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973862	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6978090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979232	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs712696	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7786199	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7811565	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[ASN][1000 genomes]
rs951992	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9656363	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9791825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs986584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127031200-127034000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:127031200-127034000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:127031200-127034000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr7:127031200-127034000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:127031200-127034200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:127031200-127034200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:127031200-127034200	Active TSS	Psoas Muscle	Psoas
8	chr7:127031200-127034200	Active TSS	Right Atrium	heart
9	chr7:127031400-127034000	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr7:127031400-127034000	Active TSS	Ovary	ovary
11	chr7:127031400-127034200	Active TSS	Colon Smooth Muscle	Colon
12	chr7:127031600-127034000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:127031600-127034000	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr7:127031600-127034000	Active TSS	Aorta	Aorta
15	chr7:127031600-127034000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr7:127031600-127034000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr7:127031600-127034200	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr7:127031800-127034000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:127031800-127034000	Active TSS	Fetal Lung	lung
20	chr7:127031800-127034000	Active TSS	Pancreas	Pancrea
21	chr7:127031800-127034200	Active TSS	Brain Angular Gyrus	brain
22	chr7:127031800-127034200	Active TSS	Brain Anterior Caudate	brain
23	chr7:127031800-127034200	Active TSS	Rectal Smooth Muscle	rectum
24	chr7:127031800-127034200	Active TSS	Right Ventricle	heart
25	chr7:127032400-127034000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:127032800-127034200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:127033000-127034000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr7:127033000-127034200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:127033000-127034200	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr7:127033000-127034200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:127033000-127034400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:127033200-127034000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr7:127033200-127034000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr7:127033200-127034000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr7:127033200-127034000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:127033200-127034000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr7:127033200-127034000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr7:127033200-127034000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:127033200-127034000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr7:127033200-127034000	Flanking Active TSS	Liver	Liver
41	chr7:127033200-127034000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr7:127033200-127034000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr7:127033400-127034000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:127033400-127034000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
45	chr7:127033400-127034000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
46	chr7:127033400-127034000	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr7:127033400-127034000	Flanking Active TSS	Fetal Heart	heart
48	chr7:127033400-127034000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
49	chr7:127033400-127034200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:127033400-127034200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links