Variant report

Variant	rs2106181
Chromosome Location	chr7:127024490-127024491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127022197..127024993-chr7:127070066..127072531,2	K562	blood:
2	chr7:126986399..126988206-chr7:127024325..127027237,2	K562	blood:
3	chr7:126986706..126988243-chr7:127024325..127027268,2	K562	blood:
4	7:127018926-127031401..7:127225864-127233104	GM12878	blood:
5	chr7:127023763..127025561-chr7:127227150..127229629,2	K562	blood:

Variant related genes	Relation type
ENSG00000004059	Chromatin interaction
ENSG00000048405	Chromatin interaction
ENSG00000106328	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10226106	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10235028	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10249162	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10249166	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10253737	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10254399	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10255062	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10263603	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10279882	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1057454	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10954148	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11563470	0.85[EUR][1000 genomes]
rs1361938	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1361940	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419392	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1419394	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1419395	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1419405	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419418	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1419419	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419420	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419421	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419423	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1946107	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1946108	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2027952	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2269728	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2269729	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2285338	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2402859	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28729203	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4728068	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731352	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731353	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731354	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4731355	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731356	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731357	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731358	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4731359	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6467120	0.84[EUR][1000 genomes]
rs6467122	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6467123	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6467124	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67076804	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6957320	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6962137	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6973862	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6978090	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6979232	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs712696	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7777556	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7786199	0.85[EUR][1000 genomes]
rs7811565	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs951992	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9656363	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9791822	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9791825	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs986584	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs987384	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126988400-127030200	Weak transcription	Fetal Intestine Small	intestine
2	chr7:126988400-127031400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:126988400-127031400	Weak transcription	Colonic Mucosa	Colon
4	chr7:126988400-127031400	Weak transcription	Pancreas	Pancrea
5	chr7:126989000-127031000	Weak transcription	Fetal Brain Male	brain
6	chr7:126991600-127030400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:126995600-127027600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:126997400-127031200	Weak transcription	Brain Substantia Nigra	brain
9	chr7:126999200-127027200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:126999400-127031400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:127001600-127027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:127001600-127029000	Weak transcription	Aorta	Aorta
13	chr7:127001600-127031200	Weak transcription	Fetal Stomach	stomach
14	chr7:127001600-127031400	Weak transcription	Brain Angular Gyrus	brain
15	chr7:127001600-127031400	Weak transcription	Esophagus	oesophagus
16	chr7:127001600-127031400	Weak transcription	Gastric	stomach
17	chr7:127001600-127031400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr7:127001600-127031400	Weak transcription	Right Ventricle	heart
19	chr7:127003800-127030200	Weak transcription	Fetal Heart	heart
20	chr7:127010200-127031400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:127012600-127030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:127013800-127031200	Weak transcription	Fetal Brain Female	brain
23	chr7:127014200-127030400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:127014400-127031000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:127014600-127027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:127014800-127027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:127015000-127025200	Weak transcription	NHLF	lung
28	chr7:127015000-127026600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:127015000-127027400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:127015000-127027400	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:127015000-127027600	Weak transcription	Left Ventricle	heart
32	chr7:127015000-127027600	Weak transcription	Ovary	ovary
33	chr7:127015000-127028800	Weak transcription	Psoas Muscle	Psoas
34	chr7:127015000-127030400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:127015000-127031000	Weak transcription	Brain Anterior Caudate	brain
36	chr7:127015000-127031200	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:127015000-127031200	Weak transcription	Thymus	Thymus
38	chr7:127015000-127031200	Weak transcription	HSMMtube	muscle
39	chr7:127015000-127031400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr7:127015000-127031400	Weak transcription	Fetal Kidney	kidney
41	chr7:127015000-127031400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:127015000-127031400	Weak transcription	Lung	lung
43	chr7:127015200-127027200	Weak transcription	Fetal Intestine Large	intestine
44	chr7:127015200-127028200	Weak transcription	Fetal Lung	lung
45	chr7:127015200-127031200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:127017600-127024800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:127017600-127025200	Weak transcription	Placenta	Placenta
48	chr7:127018200-127025200	Weak transcription	Liver	Liver
49	chr7:127018200-127031200	Weak transcription	Brain Germinal Matrix	brain
50	chr7:127020000-127025800	Strong transcription	HSMM	muscle

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