Variant report

Variant	rs1420870
Chromosome Location	chr5:103358752-103358753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11242515	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11740055	0.83[ASN][1000 genomes]
rs12654426	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12654548	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12655758	0.81[ASN][1000 genomes]
rs1420862	0.84[ASN][1000 genomes]
rs1420868	1.00[ASN][1000 genomes]
rs1420869	0.94[ASN][1000 genomes]
rs1592635	1.00[ASN][1000 genomes]
rs1990745	0.85[ASN][1000 genomes]
rs4703022	0.89[ASN][1000 genomes]
rs4703279	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4703280	0.83[ASN][1000 genomes]
rs55779157	0.84[ASN][1000 genomes]
rs55909917	0.90[ASN][1000 genomes]
rs57582826	0.91[ASN][1000 genomes]
rs58606882	0.91[ASN][1000 genomes]
rs60305106	0.83[ASN][1000 genomes]
rs66773053	0.94[ASN][1000 genomes]
rs67686311	0.83[ASN][1000 genomes]
rs68024865	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6893189	0.91[ASN][1000 genomes]
rs6897337	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7443549	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7735978	0.83[ASN][1000 genomes]
rs7737362	0.91[ASN][1000 genomes]
rs888256	0.90[ASN][1000 genomes]
rs888257	0.86[ASN][1000 genomes]
rs950664	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025859	chr5:102744479-103710290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537833	chr5:102744479-103710290	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv882525	chr5:103279166-103375179	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027818	chr5:103318123-103445127	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103356800-103359800	Weak transcription	Fetal Brain Male	brain

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