Variant report

Variant	rs888256
Chromosome Location	chr5:103343118-103343119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11242515	0.94[ASN][1000 genomes]
rs11740055	0.88[ASN][1000 genomes]
rs12654548	0.94[ASN][1000 genomes]
rs1289166	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs1289172	0.87[MEX][hapmap]
rs1420868	0.90[ASN][1000 genomes]
rs1420869	0.85[ASN][1000 genomes]
rs1420870	0.90[ASN][1000 genomes]
rs1592635	0.90[ASN][1000 genomes]
rs1922508	0.81[CEU][hapmap]
rs2111431	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs4703022	0.96[ASN][1000 genomes]
rs4703279	0.94[ASN][1000 genomes]
rs4703280	0.83[AMR][1000 genomes]
rs55779157	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55909917	0.97[ASN][1000 genomes]
rs57582826	0.99[ASN][1000 genomes]
rs58606882	0.99[ASN][1000 genomes]
rs66773053	0.96[ASN][1000 genomes]
rs68024865	0.93[ASN][1000 genomes]
rs6893189	0.99[ASN][1000 genomes]
rs6897337	0.95[ASN][1000 genomes]
rs7443549	0.94[ASN][1000 genomes]
rs7737362	0.99[ASN][1000 genomes]
rs888257	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs950664	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025859	chr5:102744479-103710290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537833	chr5:102744479-103710290	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv882525	chr5:103279166-103375179	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027818	chr5:103318123-103445127	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs888256	FCGR2C	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103340600-103343800	Weak transcription	Fetal Lung	lung

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