Variant report

Variant	rs1423672
Chromosome Location	chr5:95652676-95652677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55727519	1.00[AMR][1000 genomes]
rs60963482	1.00[AMR][1000 genomes]
rs73772319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772331	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773947	1.00[AMR][1000 genomes]
rs73773948	1.00[AMR][1000 genomes]
rs7732553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95634000-95656400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:95644600-95658000	Weak transcription	Aorta	Aorta
3	chr5:95647400-95656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95651200-95652800	Enhancers	HepG2	liver
5	chr5:95651400-95657400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:95651600-95652800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:95652000-95652800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:95652000-95652800	Enhancers	Liver	Liver
9	chr5:95652000-95653000	Enhancers	Fetal Intestine Large	intestine
10	chr5:95652200-95653400	Weak transcription	Fetal Heart	heart
11	chr5:95652200-95654000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:95652200-95655000	Weak transcription	GM12878-XiMat	blood
13	chr5:95652400-95652800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:95652400-95653400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:95652400-95654400	Weak transcription	Psoas Muscle	Psoas
16	chr5:95652400-95656200	Weak transcription	NHEK	skin
17	chr5:95652400-95656400	Weak transcription	NHLF	lung
18	chr5:95652600-95652800	Enhancers	A549	lung
19	chr5:95652600-95656400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:95652600-95656600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:95652600-95657600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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