Variant report

Variant	rs73772331
Chromosome Location	chr5:95659553-95659554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1423672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2350002	0.82[AFR][1000 genomes]
rs55727519	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60963482	1.00[AMR][1000 genomes]
rs73772319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773947	1.00[AMR][1000 genomes]
rs73773948	1.00[AMR][1000 genomes]
rs7732553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95657600-95659600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:95657600-95660000	Weak transcription	Hela-S3	cervix
3	chr5:95657600-95660000	Weak transcription	NHEK	skin
4	chr5:95657800-95660800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95658000-95659800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:95658000-95659800	Weak transcription	Osteobl	bone
7	chr5:95658000-95660000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:95658000-95660000	Weak transcription	HMEC	breast
9	chr5:95658000-95660200	Weak transcription	NHLF	lung
10	chr5:95658000-95664800	Weak transcription	HSMM	muscle
11	chr5:95658200-95660000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:95658200-95660000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:95658200-95660000	Weak transcription	NHDF-Ad	bronchial
14	chr5:95658200-95660200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:95658200-95660200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
17	chr5:95658800-95659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:95659000-95666600	Weak transcription	HepG2	liver
19	chr5:95659000-95667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:95659400-95661000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:95659400-95664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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