Variant report

Variant	rs73772319
Chromosome Location	chr5:95631857-95631858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1423672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2350002	0.82[AFR][1000 genomes]
rs55727519	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60963482	1.00[AMR][1000 genomes]
rs73772331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773947	1.00[AMR][1000 genomes]
rs73773948	1.00[AMR][1000 genomes]
rs7732553	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:95625000-95632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:95629200-95633200	Weak transcription	Adipose Nuclei	Adipose
7	chr5:95630400-95632400	Weak transcription	Fetal Heart	heart
8	chr5:95630600-95632200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:95630600-95632400	Weak transcription	NHDF-Ad	bronchial
10	chr5:95630600-95633000	Weak transcription	Liver	Liver
11	chr5:95630600-95635400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:95630800-95633000	Weak transcription	A549	lung
13	chr5:95630800-95633800	Weak transcription	NH-A	brain
14	chr5:95631000-95632200	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:95631000-95632400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:95631000-95634200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:95631200-95632200	Weak transcription	Brain Substantia Nigra	brain
18	chr5:95631200-95632200	Weak transcription	HepG2	liver
19	chr5:95631200-95632400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:95631200-95632400	Weak transcription	NHLF	lung
21	chr5:95631200-95633000	Weak transcription	Brain Anterior Caudate	brain
22	chr5:95631200-95633000	Weak transcription	HSMM	muscle
23	chr5:95631200-95635200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:95631400-95632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr5:95631400-95632400	Weak transcription	Osteobl	bone
26	chr5:95631600-95633000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:95631600-95633200	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr5:95631800-95632200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr5:95631800-95635400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:95631800-95635400	Enhancers	Primary neutrophils fromperipheralblood	blood

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