Variant report

Variant	rs1427953
Chromosome Location	chr5:91170372-91170373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:91164818..91166462-chr5:91169540..91172351,2	MCF-7	breast:
2	chr5:91165736..91168298-chr5:91169196..91172814,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1427945	1.00[EUR][1000 genomes]
rs1560048	0.90[EUR][1000 genomes]
rs16870132	1.00[EUR][1000 genomes]
rs34151557	0.89[EUR][1000 genomes]
rs34665168	1.00[EUR][1000 genomes]
rs34846998	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34995238	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273547	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35438038	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841145	0.89[EUR][1000 genomes]
rs35884360	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36085805	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452973	1.00[EUR][1000 genomes]
rs6891046	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71637358	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71637361	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71637362	0.83[ASN][1000 genomes]
rs73143247	1.00[EUR][1000 genomes]
rs7722500	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722750	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1017504	chr5:91092920-91178854	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91162600-91171200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:91165400-91170800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:91165400-91170800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:91169800-91170400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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