Variant report

Variant	rs71637361
Chromosome Location	chr5:91197020-91197021
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1427945	0.84[EUR][1000 genomes]
rs1427953	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870132	0.84[EUR][1000 genomes]
rs34151557	0.94[EUR][1000 genomes]
rs34665168	0.84[EUR][1000 genomes]
rs34846998	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34995238	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35151547	0.88[EUR][1000 genomes]
rs35273547	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35438038	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841145	0.94[EUR][1000 genomes]
rs35884360	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36085805	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452973	0.84[EUR][1000 genomes]
rs6891046	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71637358	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71637362	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73143247	0.84[EUR][1000 genomes]
rs7722500	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722750	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91196800-91198000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:91197000-91198000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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