Variant report

Variant	rs1434859
Chromosome Location	chr9:26243325-26243326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10967253	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10967259	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13287200	0.92[AFR][1000 genomes]
rs13300363	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1434857	0.85[EUR][1000 genomes]
rs353440	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs389327	0.86[AMR][1000 genomes]
rs417365	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs473788	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4978058	0.85[EUR][1000 genomes]
rs629448	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015883	chr9:25633359-26315286	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv892844	chr9:26062582-26298134	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv613927	chr9:26153793-26284317	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv995049	chr9:26162115-26760535	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892849	chr9:26225232-26284317	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv526445	chr9:26239410-26248035	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1033265	chr9:26242026-26425832	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26240400-26249400	Enhancers	Hela-S3	cervix
2	chr9:26242600-26245000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr9:26242600-26245000	Enhancers	HUVEC	blood vessel
4	chr9:26242800-26245400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:26243200-26243800	Enhancers	NH-A	brain
6	chr9:26243200-26244400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:26243200-26244400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:26243200-26244800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:26243200-26244800	Enhancers	A549	lung
10	chr9:26243200-26245800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:26243200-26248600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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