Variant report

Variant	rs1435128
Chromosome Location	chr4:142159475-142159476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:142152209..142155959-chr4:142156950..142159501,4	K562	blood:
2	chr4:142157764..142162103-chr4:142246811..142251901,4	K562	blood:
3	chr4:142156458..142159953-chr4:142166244..142169936,4	K562	blood:

Variant related genes	Relation type
ENSG00000248810	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10005409	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10005476	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10020128	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13105932	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1550056	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17349862	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28700051	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4645293	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6537037	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6822047	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6822261	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6827471	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6855160	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6855552	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856508	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs732624	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7672861	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7677757	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692424	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs920039	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9996068	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1435128	IL15	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142151400-142166600	Weak transcription	NHLF	lung
2	chr4:142155200-142160200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:142155400-142160400	Weak transcription	Fetal Lung	lung
4	chr4:142155400-142167400	Weak transcription	K562	blood
5	chr4:142156000-142166800	Weak transcription	NHDF-Ad	bronchial
6	chr4:142156600-142159600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:142156600-142163200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:142156600-142166600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:142156600-142166800	Weak transcription	NH-A	brain
10	chr4:142156800-142161600	Weak transcription	Gastric	stomach
11	chr4:142156800-142166600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:142156800-142166600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:142156800-142166600	Weak transcription	Osteobl	bone
14	chr4:142156800-142166800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:142156800-142167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:142157000-142161600	Weak transcription	GM12878-XiMat	blood
17	chr4:142157000-142166600	Weak transcription	HSMMtube	muscle
18	chr4:142157000-142167000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:142157200-142160600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:142157200-142166600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:142157200-142167000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:142157200-142167000	Weak transcription	Adipose Nuclei	Adipose
23	chr4:142157200-142167200	Weak transcription	Fetal Heart	heart
24	chr4:142157200-142167400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:142157400-142160200	Weak transcription	Left Ventricle	heart
26	chr4:142157600-142160400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:142158000-142159600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:142158000-142161200	Weak transcription	Primary T cells from cord blood	blood
29	chr4:142158000-142166600	Weak transcription	HSMM	muscle

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