Variant report

Variant	rs732624
Chromosome Location	chr4:142151573-142151574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:142140626..142144064-chr4:142151418..142153859,4	MCF-7	breast:
2	chr4:142150077..142152832-chr4:142160080..142162137,2	K562	blood:
3	chr4:142150237..142152306-chr4:142168251..142170748,2	K562	blood:
4	chr4:142151524..142153740-chr4:142155253..142157789,3	K562	blood:
5	chr4:142150167..142154437-chr4:142247980..142250502,4	K562	blood:

Variant related genes	Relation type
ENSG00000109445	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10005409	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10005476	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10020128	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13105932	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435128	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1550056	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17349862	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28700051	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4645293	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6537037	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6822047	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6822261	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6827471	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6855160	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855552	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6856508	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7672861	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7677757	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7692424	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs920039	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9996068	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757959	chr4:142065661-142367951	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2759287	chr4:142065661-142367951	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142142600-142159400	Weak transcription	Spleen	Spleen
2	chr4:142142800-142154800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:142142800-142154800	Weak transcription	Pancreas	Pancrea
4	chr4:142143000-142151800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:142143000-142152800	Weak transcription	Brain Germinal Matrix	brain
6	chr4:142143000-142154600	Weak transcription	Colonic Mucosa	Colon
7	chr4:142143200-142153000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:142143200-142153200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:142143200-142154800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:142143200-142157000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:142143400-142154800	Weak transcription	Fetal Stomach	stomach
12	chr4:142143400-142155000	Weak transcription	Fetal Brain Female	brain
13	chr4:142143400-142156400	Weak transcription	Stomach Mucosa	stomach
14	chr4:142143600-142154400	Weak transcription	HSMMtube	muscle
15	chr4:142143600-142154800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:142143600-142154800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:142143600-142156400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:142143600-142156400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:142143800-142156600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:142143800-142156800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:142143800-142157000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr4:142143800-142158800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr4:142144000-142155400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:142144000-142156400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:142144000-142156800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:142144000-142156800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr4:142144000-142157000	Strong transcription	Fetal Thymus	thymus
28	chr4:142144000-142157200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr4:142144000-142158000	Strong transcription	HSMM	muscle
30	chr4:142144200-142156800	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr4:142144200-142157000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:142144200-142157000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:142144200-142157200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:142144200-142157200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:142144400-142155400	Strong transcription	K562	blood
36	chr4:142144400-142156200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:142144400-142156600	Strong transcription	Primary B cells from cord blood	blood
38	chr4:142144400-142157200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:142144600-142156400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr4:142144600-142156800	Strong transcription	Primary hematopoietic stem cells	blood
41	chr4:142144600-142156800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:142144600-142156800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr4:142144600-142156800	Strong transcription	Osteobl	bone
44	chr4:142144600-142157200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr4:142144800-142153000	Weak transcription	Brain Angular Gyrus	brain
46	chr4:142144800-142156800	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr4:142144800-142157200	Strong transcription	Stomach Smooth Muscle	stomach
48	chr4:142144800-142157600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:142144800-142157800	Strong transcription	Dnd41	blood
50	chr4:142144800-142158000	Strong transcription	Primary T cells from cord blood	blood

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