Variant report

Variant	rs1436880
Chromosome Location	chr1:217079509-217079510
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1030849	0.82[ASN][1000 genomes]
rs11117718	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11117720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12563547	0.82[ASN][1000 genomes]
rs12568315	0.90[EUR][1000 genomes]
rs1436879	1.00[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs1436881	0.90[EUR][1000 genomes]
rs1898312	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs2576203	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2576205	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs2576206	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs3795704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60647584	0.90[EUR][1000 genomes]
rs61325680	0.82[ASN][1000 genomes]
rs956977	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217072200-217082800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:217074400-217080000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:217076600-217079600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:217076600-217079800	Weak transcription	Small Intestine	intestine
6	chr1:217076800-217083600	Weak transcription	Brain Anterior Caudate	brain
7	chr1:217077000-217081600	Weak transcription	Gastric	stomach
8	chr1:217077000-217082400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:217077400-217080000	Enhancers	HMEC	breast
10	chr1:217078600-217080000	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:217078600-217080000	Enhancers	Fetal Intestine Small	intestine
12	chr1:217078600-217088000	Weak transcription	Right Atrium	heart
13	chr1:217078800-217079800	Weak transcription	Pancreas	Pancrea
14	chr1:217078800-217081600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:217079000-217079800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:217079000-217086400	Weak transcription	Fetal Heart	heart
17	chr1:217079400-217079800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr1:217079400-217081800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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