Variant report

Variant	rs956977
Chromosome Location	chr1:217078455-217078456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:217065075..217066697-chr1:217076274..217078802,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1030849	0.84[EUR][1000 genomes]
rs11117720	0.85[CEU][hapmap]
rs12563547	0.91[EUR][1000 genomes]
rs12568315	0.83[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs1436879	0.85[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1436880	0.85[CEU][hapmap]
rs1436881	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1436882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1898312	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2576203	0.87[CEU][hapmap]
rs2576206	0.87[CEU][hapmap]
rs3795704	0.85[CEU][hapmap]
rs60647584	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61245105	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61325680	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873179	chr1:217056893-217112871	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv873180	chr1:217073060-217112871	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217062800-217087800	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:217072200-217082800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:217074400-217080000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:217074600-217078800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:217075200-217078800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:217075800-217079000	Enhancers	HepG2	liver
7	chr1:217076000-217078600	Enhancers	Right Atrium	heart
8	chr1:217076000-217079000	Enhancers	Fetal Heart	heart
9	chr1:217076000-217079000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:217076000-217079400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:217076400-217078800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:217076600-217079600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:217076600-217079800	Weak transcription	Small Intestine	intestine
14	chr1:217076800-217083600	Weak transcription	Brain Anterior Caudate	brain
15	chr1:217077000-217078600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:217077000-217078600	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr1:217077000-217081600	Weak transcription	Gastric	stomach
18	chr1:217077000-217082400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:217077400-217079000	Enhancers	NHEK	skin
20	chr1:217077400-217080000	Enhancers	HMEC	breast
21	chr1:217077800-217079400	Enhancers	Left Ventricle	heart
22	chr1:217078000-217078800	Enhancers	Pancreas	Pancrea
23	chr1:217078200-217078600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:217078200-217078800	Flanking Active TSS	Fetal Intestine Large	intestine
25	chr1:217078400-217078600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:217078400-217078600	Flanking Active TSS	Duodenum Mucosa	Duodenum

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