Variant report

Variant	rs1436902
Chromosome Location	chr18:24606989-24606990
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10502482	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12953982	0.99[ASN][1000 genomes]
rs12954200	0.84[ASN][1000 genomes]
rs12963112	0.82[ASN][1000 genomes]
rs12965711	0.83[ASN][1000 genomes]
rs12966203	0.95[ASN][1000 genomes]
rs12966301	0.96[ASN][1000 genomes]
rs12967710	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436906	0.99[ASN][1000 genomes]
rs16943089	0.88[ASN][1000 genomes]
rs16943144	0.95[ASN][1000 genomes]
rs16943156	0.95[ASN][1000 genomes]
rs16943160	0.95[ASN][1000 genomes]
rs16943161	0.95[ASN][1000 genomes]
rs16943164	0.95[ASN][1000 genomes]
rs16943175	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16943178	0.99[ASN][1000 genomes]
rs16943184	0.99[ASN][1000 genomes]
rs16943222	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16960687	0.95[ASN][1000 genomes]
rs1821789	0.88[ASN][1000 genomes]
rs1941113	0.95[ASN][1000 genomes]
rs28564652	0.88[ASN][1000 genomes]
rs28647464	0.83[ASN][1000 genomes]
rs34738073	0.99[ASN][1000 genomes]
rs35443853	0.84[ASN][1000 genomes]
rs35507377	0.86[ASN][1000 genomes]
rs35725335	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4800274	0.87[ASN][1000 genomes]
rs4800782	0.84[ASN][1000 genomes]
rs56218423	0.88[ASN][1000 genomes]
rs60742277	0.88[ASN][1000 genomes]
rs60856601	0.88[ASN][1000 genomes]
rs6508462	0.88[ASN][1000 genomes]
rs71353424	0.99[ASN][1000 genomes]
rs717284	0.99[ASN][1000 genomes]
rs7229046	0.88[ASN][1000 genomes]
rs7234761	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7236637	0.88[ASN][1000 genomes]
rs8087494	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24601400-24609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:24603000-24609400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:24606200-24613200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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