Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12953982	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12966203	0.92[AFR][1000 genomes]
rs12966301	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12967710	1.00[ASN][1000 genomes]
rs12968314	0.90[AFR][1000 genomes]
rs1436902	0.84[ASN][1000 genomes]
rs1436906	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16943033	0.92[AFR][1000 genomes]
rs16943144	0.96[AFR][1000 genomes]
rs16943156	0.96[AFR][1000 genomes]
rs16943160	0.96[AFR][1000 genomes]
rs16943161	0.96[AFR][1000 genomes]
rs16943164	0.96[AFR][1000 genomes]
rs16943175	0.80[ASN][1000 genomes]
rs16943178	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16943184	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16943222	0.95[ASN][1000 genomes]
rs16960687	0.96[AFR][1000 genomes]
rs34738073	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35269358	0.90[AFR][1000 genomes]
rs35725335	1.00[ASN][1000 genomes]
rs4800777	0.83[AFR][1000 genomes]
rs4800782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71353424	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs717284	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24613400-24620400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24614000-24631000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:24614200-24624600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:24614600-24631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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