Variant report

Variant	rs1441904
Chromosome Location	chr4:77151880-77151881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77132958..77141575-chr4:77150872..77159587,22	MCF-7	breast:
2	chr4:77143025..77144771-chr4:77149796..77152132,2	MCF-7	breast:
3	chr4:77149994..77152737-chr4:77153466..77157199,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2034004	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.95[ASN][1000 genomes]
rs2119730	0.90[ASN][1000 genomes]
rs2174921	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4101061	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306982	0.88[ASN][1000 genomes]
rs4530661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275416	0.93[ASN][1000 genomes]
rs56277851	0.85[ASN][1000 genomes]
rs6848690	0.95[ASN][1000 genomes]
rs7665857	0.88[ASN][1000 genomes]
rs7667447	0.88[ASN][1000 genomes]
rs7671407	0.81[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1441904	CCNI	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
3	chr4:77150200-77154400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:77150400-77152000	ZNF genes & repeats	NHEK	skin
5	chr4:77150600-77152200	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr4:77150600-77152400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr4:77150600-77152400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:77150600-77152600	ZNF genes & repeats	K562	blood
9	chr4:77150600-77153200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:77151000-77154200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:77151000-77154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:77151000-77154400	Weak transcription	Placenta	Placenta
13	chr4:77151200-77154000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:77151400-77152400	Weak transcription	Fetal Intestine Large	intestine
15	chr4:77151400-77152600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:77151400-77154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr4:77151400-77154400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:77151600-77152400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:77151600-77154200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:77151600-77155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links