Variant report

Variant	rs56277851
Chromosome Location	chr4:77146872-77146873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1441904	0.85[ASN][1000 genomes]
rs2034004	0.81[ASN][1000 genomes]
rs2119730	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2174921	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4101061	0.85[ASN][1000 genomes]
rs4306982	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4530661	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4859435	0.85[ASN][1000 genomes]
rs56275416	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6848690	0.82[ASN][1000 genomes]
rs7665857	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7667447	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56277851	FAM47E,STBD1	cis	brain	BrainEAC

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77135800-77147400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:77136000-77150600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:77138600-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:77139000-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:77141000-77147400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea
8	chr4:77145000-77147200	Weak transcription	Liver	Liver
9	chr4:77146000-77147600	Weak transcription	Fetal Intestine Large	intestine
10	chr4:77146400-77147600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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