Variant report

Variant	rs4530661
Chromosome Location	chr4:77149335-77149336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1441904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034004	0.94[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.95[ASN][1000 genomes]
rs2119730	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2174921	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4101061	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306982	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4859435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56275416	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56277851	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6848690	0.95[ASN][1000 genomes]
rs7665857	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7667447	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7671407	0.81[CHB][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4530661	GPR183	trans	lymphoblastoid	seeQTL
rs4530661	CCNI	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77136000-77150600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:77138600-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:77138800-77155200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:77139000-77150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:77142400-77154800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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