Variant report

Variant	rs1443753
Chromosome Location	chr7:121949318-121949319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11761299	0.92[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[EUR][1000 genomes]
rs11762051	0.81[CHB][hapmap]
rs11767283	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11978249	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1867335	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3958045	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5007345	0.81[CHB][hapmap]
rs538558	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs6968786	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs6976916	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121940000-121951000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121946600-121951000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:121946800-121950200	Weak transcription	Gastric	stomach
4	chr7:121947400-121951200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:121947600-121950200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
6	chr7:121947600-121950200	Weak transcription	Right Ventricle	heart
7	chr7:121947800-121950200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr7:121947800-121950400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
9	chr7:121948800-121949400	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
10	chr7:121948800-121949600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:121948800-121949800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr7:121948800-121949800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:121948800-121950200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
14	chr7:121948800-121950800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:121949000-121950000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr7:121949000-121950200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:121949200-121949600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr7:121949200-121949600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr7:121949200-121949800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links