Variant report

Variant	rs5007345
Chromosome Location	chr7:121939771-121939772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr7:121939309-121947723	NT2-D1	testis:	n/a	n/a
2	POLR2A	chr7:121939698-121940066	H1-neurons	neurons:	n/a	n/a
3	CTBP2	chr7:121939603-121940700	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:121939332-121941685	SK-N-MC	brain:	n/a	n/a
5	POLR2A	chr7:121939705-121941759	SK-N-MC	brain:	n/a	n/a
6	SIN3A	chr7:121939586-121940811	H1-hESC	embryonic stem cell:	n/a	chr7:121940589-121940602
7	TBP	chr7:121939770-121940234	H1-hESC	embryonic stem cell:	n/a	n/a
8	SUZ12	chr7:121939625-121941152	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr7:121939642-121940539	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121937076..121939820-chr7:121942535..121944599,3	K562	blood:

Variant related genes	Relation type
FEZF1-AS1	TF binding region
ENSG00000230316	Chromatin interaction
ENSG00000128610	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11761299	0.86[CHB][hapmap]
rs11762051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11767283	0.81[CHB][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs11978249	0.85[ASN][1000 genomes]
rs1443753	0.81[CHB][hapmap]
rs1867335	0.81[CHB][hapmap]
rs1909945	1.00[ASN][1000 genomes]
rs538558	0.86[CHB][hapmap]
rs58938116	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6968786	0.86[CHB][hapmap]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121939400-121940600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
2	chr7:121939400-121940800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr7:121939600-121939800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
4	chr7:121939600-121939800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
5	chr7:121939600-121939800	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:121939600-121939800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:121939600-121939800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:121939600-121939800	Bivalent Enhancer	Adipose Nuclei	Adipose
9	chr7:121939600-121939800	Bivalent/Poised TSS	Colonic Mucosa	Colon
10	chr7:121939600-121939800	Enhancers	Right Atrium	heart
11	chr7:121939600-121939800	Active TSS	Right Ventricle	heart
12	chr7:121939600-121939800	Bivalent Enhancer	HepG2	liver
13	chr7:121939600-121940000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:121939600-121940000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:121939600-121940000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr7:121939600-121940000	Bivalent Enhancer	Brain Angular Gyrus	brain
17	chr7:121939600-121940200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
18	chr7:121939600-121940200	Bivalent Enhancer	Brain Hippocampus Middle	brain
19	chr7:121939600-121940200	Bivalent Enhancer	Colon Smooth Muscle	Colon
20	chr7:121939600-121940200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
21	chr7:121939600-121940400	Bivalent Enhancer	Brain Substantia Nigra	brain
22	chr7:121939600-121940600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:121939600-121940600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
24	chr7:121939600-121940600	Enhancers	Pancreas	Pancrea
25	chr7:121939600-121940800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr7:121939600-121940800	Bivalent Enhancer	Fetal Intestine Small	intestine
27	chr7:121939600-121941000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr7:121939600-121941000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
29	chr7:121939600-121941000	Bivalent Enhancer	Fetal Heart	heart
30	chr7:121939600-121941000	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr7:121939600-121941200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
32	chr7:121939600-121943000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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