Variant report

Variant	rs1444930
Chromosome Location	chr4:95845911-95845912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10021303	1.00[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10516956	0.82[JPT][hapmap]
rs11934132	0.82[JPT][hapmap]
rs11940214	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11943406	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13106009	0.82[JPT][hapmap]
rs13108056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13118309	0.82[JPT][hapmap]
rs13142031	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1373649	0.82[JPT][hapmap]
rs1373651	0.82[JPT][hapmap]
rs1444927	0.82[JPT][hapmap]
rs1444928	0.82[JPT][hapmap]
rs1444929	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28433320	0.87[ASN][1000 genomes]
rs28521217	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3775017	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3775021	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775024	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775025	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3775026	0.87[ASN][1000 genomes]
rs3796413	0.82[JPT][hapmap]
rs3796419	0.82[JPT][hapmap]
rs3796423	0.82[JPT][hapmap]
rs3796424	0.82[JPT][hapmap]
rs41420348	0.87[ASN][1000 genomes]
rs6849425	0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7655484	0.82[JPT][hapmap]
rs7658478	0.82[JPT][hapmap]
rs7661049	0.82[JPT][hapmap]
rs7671870	0.82[JPT][hapmap]
rs7673752	0.82[JPT][hapmap]
rs930581	0.82[JPT][hapmap]
rs9307150	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:95838400-95848200	Weak transcription	Ovary	ovary
3	chr4:95842200-95848400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:95845600-95846200	Enhancers	NHEK	skin
5	chr4:95845600-95846400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:95845600-95846400	Enhancers	HMEC	breast
7	chr4:95845800-95846400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:95845800-95848200	Enhancers	A549	lung

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