Variant report

Variant	rs6849425
Chromosome Location	chr4:95855547-95855548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95840751..95844269-chr4:95852571..95856189,3	K562	blood:
2	chr4:95848217..95850324-chr4:95853544..95856534,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10516956	0.82[JPT][hapmap]
rs11934132	0.82[JPT][hapmap]
rs11940214	0.86[ASN][1000 genomes]
rs11943406	0.84[ASN][1000 genomes]
rs12642960	0.81[ASN][1000 genomes]
rs12643902	0.81[ASN][1000 genomes]
rs13103598	0.81[ASN][1000 genomes]
rs13106009	0.82[JPT][hapmap]
rs13108056	0.89[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs13110508	0.81[ASN][1000 genomes]
rs13116658	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13118309	0.82[JPT][hapmap]
rs13127704	0.81[ASN][1000 genomes]
rs13144015	0.81[AMR][1000 genomes]
rs13144086	0.81[ASN][1000 genomes]
rs1373649	0.82[JPT][hapmap]
rs1373651	0.82[JPT][hapmap]
rs1444927	0.82[JPT][hapmap]
rs1444928	0.82[JPT][hapmap]
rs1444930	0.88[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17401411	0.81[ASN][1000 genomes]
rs17401571	0.81[ASN][1000 genomes]
rs1992650	0.81[ASN][1000 genomes]
rs1992651	0.81[ASN][1000 genomes]
rs28433320	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28521217	0.84[ASN][1000 genomes]
rs34340033	0.81[ASN][1000 genomes]
rs3775006	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3775007	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3775017	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3775021	0.87[ASN][1000 genomes]
rs3775022	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs3775024	0.84[ASN][1000 genomes]
rs3775025	0.86[ASN][1000 genomes]
rs3775026	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796413	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3796419	0.82[JPT][hapmap]
rs3796423	0.82[JPT][hapmap]
rs3796424	0.82[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs41420348	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62316224	0.81[ASN][1000 genomes]
rs7655484	0.82[JPT][hapmap]
rs7658478	0.82[JPT][hapmap]
rs7661049	0.82[JPT][hapmap]
rs7671870	0.82[JPT][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs7673752	0.82[JPT][hapmap]
rs7691748	0.81[ASN][1000 genomes]
rs930581	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9307150	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9684200	0.81[ASN][1000 genomes]
rs9684808	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1014420	chr4:95853357-95886153	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537189	chr4:95853357-95886153	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95849200-95856400	Weak transcription	Aorta	Aorta
2	chr4:95849200-95861600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95849600-95856400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:95850400-95855600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:95850800-95861000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:95853200-95860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:95853400-95858200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:95853600-95857800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:95854600-95856800	Enhancers	NHEK	skin
10	chr4:95854800-95856400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:95854800-95856800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:95855000-95855600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:95855000-95855800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:95855000-95855800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:95855000-95856000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:95855000-95856000	Enhancers	HUVEC	blood vessel
17	chr4:95855000-95856000	Flanking Active TSS	NH-A	brain
18	chr4:95855000-95856200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:95855000-95856400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:95855000-95856800	Enhancers	HMEC	breast
21	chr4:95855200-95855600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:95855200-95856000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr4:95855400-95855800	Flanking Active TSS	Osteobl	bone
24	chr4:95855400-95856400	Active TSS	A549	lung
25	chr4:95855400-95857000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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