Variant report

Variant	rs3775017
Chromosome Location	chr4:95843673-95843674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95840751..95844269-chr4:95852571..95856189,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10516956	0.82[JPT][hapmap]
rs11934132	0.82[JPT][hapmap]
rs11940214	0.86[ASN][1000 genomes]
rs11943406	0.84[ASN][1000 genomes]
rs12642960	0.81[ASN][1000 genomes]
rs12643902	0.81[ASN][1000 genomes]
rs13103598	0.81[ASN][1000 genomes]
rs13106009	0.83[JPT][hapmap]
rs13108056	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs13110508	0.81[ASN][1000 genomes]
rs13118309	0.82[JPT][hapmap]
rs13127704	0.81[ASN][1000 genomes]
rs13144086	0.81[ASN][1000 genomes]
rs1373649	0.82[JPT][hapmap]
rs1373651	0.82[JPT][hapmap]
rs1444927	0.83[JPT][hapmap]
rs1444928	0.82[JPT][hapmap]
rs1444930	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17401411	0.81[ASN][1000 genomes]
rs17401571	0.81[ASN][1000 genomes]
rs1992650	0.81[ASN][1000 genomes]
rs1992651	0.81[ASN][1000 genomes]
rs28433320	1.00[ASN][1000 genomes]
rs28521217	0.84[ASN][1000 genomes]
rs34340033	0.81[ASN][1000 genomes]
rs3775021	0.87[ASN][1000 genomes]
rs3775022	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs3775024	0.84[ASN][1000 genomes]
rs3775025	0.86[ASN][1000 genomes]
rs3775026	1.00[ASN][1000 genomes]
rs3796413	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3796419	0.82[JPT][hapmap]
rs3796423	0.83[JPT][hapmap]
rs3796424	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs41420348	1.00[ASN][1000 genomes]
rs62316211	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62316224	0.81[ASN][1000 genomes]
rs6849425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7655484	0.82[JPT][hapmap]
rs7658478	0.83[JPT][hapmap]
rs7661049	0.82[JPT][hapmap]
rs7671870	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7673752	0.82[JPT][hapmap]
rs7691748	0.81[ASN][1000 genomes]
rs930581	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9307150	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs9684200	0.81[ASN][1000 genomes]
rs9684808	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95816800-95845800	Weak transcription	A549	lung
2	chr4:95831000-95855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:95838400-95848200	Weak transcription	Ovary	ovary
4	chr4:95839400-95843800	Weak transcription	Thymus	Thymus
5	chr4:95842200-95848400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links