Variant report

Variant	rs1445614
Chromosome Location	chr11:105538068-105538069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10791765	1.00[AMR][1000 genomes]
rs1445602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1445609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1445611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1445612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1470458	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1562219	0.84[AFR][1000 genomes]
rs1822986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1822987	1.00[AFR][1000 genomes]
rs1822990	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1942968	1.00[AMR][1000 genomes]
rs2028817	0.80[AFR][1000 genomes]
rs2028818	0.80[AFR][1000 genomes]
rs57867779	0.88[AFR][1000 genomes]
rs613114	0.88[AFR][1000 genomes]
rs61451353	0.88[AFR][1000 genomes]
rs7129127	0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7934957	1.00[AMR][1000 genomes]
rs9667155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105524200-105556800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105537200-105540200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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