Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10791765	0.80[YRI][hapmap]
rs11820104	1.00[AMR][1000 genomes]
rs11826985	1.00[AMR][1000 genomes]
rs1445602	0.83[AFR][1000 genomes]
rs1445609	0.88[AFR][1000 genomes]
rs1445611	0.88[AFR][1000 genomes]
rs1445612	0.88[AFR][1000 genomes]
rs1445614	0.88[AFR][1000 genomes]
rs1470458	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs17104599	1.00[AMR][1000 genomes]
rs1822986	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs1822987	0.88[AFR][1000 genomes]
rs1822990	0.84[AFR][1000 genomes]
rs2028817	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2028818	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4755109	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs561015	1.00[LWK][hapmap]
rs57867779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209066	1.00[AMR][1000 genomes]
rs61451353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61476171	1.00[AMR][1000 genomes]
rs635980	1.00[LWK][hapmap]
rs7129127	0.87[LWK][hapmap];0.93[MKK][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs7948356	1.00[AMR][1000 genomes]
rs7950549	1.00[AMR][1000 genomes]
rs9667155	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105591400-105592600	Enhancers	Fetal Brain Male	brain
3	chr11:105591600-105595400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:105591800-105596000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105592400-105592600	Enhancers	Brain Germinal Matrix	brain

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