Variant report

Variant	rs7950549
Chromosome Location	chr11:105691457-105691458
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11820104	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826985	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104599	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2028817	1.00[AMR][1000 genomes]
rs2028818	1.00[AMR][1000 genomes]
rs4755109	1.00[AMR][1000 genomes]
rs57867779	1.00[AMR][1000 genomes]
rs59209066	1.00[AMR][1000 genomes]
rs613114	1.00[AMR][1000 genomes]
rs61451353	1.00[AMR][1000 genomes]
rs61476171	1.00[AMR][1000 genomes]
rs7948356	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832257	chr11:105662753-105817576	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1825856	chr11:105672706-105775768	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105658200-105693200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105687800-105692000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105690800-105692800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:105690800-105693400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:105691000-105692000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:105691000-105693400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:105691000-105693800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:105691400-105691800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:105691400-105693400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:105691400-105702000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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