Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:105571886-105572351	MCF-7	breast:	n/a	n/a
2	GATA3	chr11:105571778-105572276	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000255403	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11820104	1.00[AMR][1000 genomes]
rs11826985	1.00[AMR][1000 genomes]
rs1445609	0.80[AFR][1000 genomes]
rs1445611	0.80[AFR][1000 genomes]
rs1445612	0.80[AFR][1000 genomes]
rs1445614	0.80[AFR][1000 genomes]
rs1470458	0.80[AFR][1000 genomes]
rs17104599	1.00[AMR][1000 genomes]
rs1822986	0.80[AFR][1000 genomes]
rs1822987	0.80[AFR][1000 genomes]
rs2028818	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4755109	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs561015	0.85[LWK][hapmap]
rs57867779	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209066	1.00[AMR][1000 genomes]
rs613114	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61451353	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61476171	1.00[AMR][1000 genomes]
rs635980	0.88[LWK][hapmap]
rs7948356	1.00[AMR][1000 genomes]
rs7950549	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:105567000-105596600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:105568600-105576400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:105570400-105575800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:105571200-105576400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:105571600-105576800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:105571600-105589000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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