Variant report

Variant	rs1446016
Chromosome Location	chr5:16140099-16140100
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1446017	0.86[ASN][1000 genomes]
rs344700	0.82[ASN][1000 genomes]
rs344702	0.82[ASN][1000 genomes]
rs55805585	0.85[ASN][1000 genomes]
rs62350172	0.81[ASN][1000 genomes]
rs62350173	0.80[ASN][1000 genomes]
rs72738278	0.80[ASN][1000 genomes]
rs72738279	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2304812	chr5:16140098-16140099	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16137200-16140400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16139000-16143200	Weak transcription	Right Ventricle	heart
3	chr5:16139800-16141800	Enhancers	Dnd41	blood
4	chr5:16140000-16141200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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