Variant report

Variant	rs344702
Chromosome Location	chr5:16141996-16141997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10055215	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10064270	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12656071	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12658225	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1446016	0.82[ASN][1000 genomes]
rs1446017	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs173178	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17649190	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17649196	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17649202	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2402096	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs344700	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761735	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4146756	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55805585	0.96[ASN][1000 genomes]
rs55959842	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56876261	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62350163	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62350164	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62350168	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62350172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62350173	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72738271	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72738275	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72738278	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72738279	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9312904	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16139000-16143200	Weak transcription	Right Ventricle	heart
2	chr5:16140400-16142200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:16140400-16149600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:16141200-16144600	Enhancers	Ovary	ovary
5	chr5:16141200-16144800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:16141400-16142000	Weak transcription	Fetal Stomach	stomach
7	chr5:16141600-16143200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:16141600-16148600	Weak transcription	Left Ventricle	heart
9	chr5:16141800-16143200	Enhancers	Fetal Heart	heart

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