Variant report

Variant	rs55805585
Chromosome Location	chr5:16159095-16159096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10055215	0.86[ASN][1000 genomes]
rs10064270	0.88[ASN][1000 genomes]
rs12652097	0.81[AMR][1000 genomes]
rs12656071	0.87[ASN][1000 genomes]
rs12658225	0.87[ASN][1000 genomes]
rs1446016	0.85[ASN][1000 genomes]
rs1446017	0.99[ASN][1000 genomes]
rs173178	0.90[ASN][1000 genomes]
rs17649190	0.88[ASN][1000 genomes]
rs17649196	0.88[ASN][1000 genomes]
rs17649202	0.82[ASN][1000 genomes]
rs2402096	0.87[ASN][1000 genomes]
rs344700	0.96[ASN][1000 genomes]
rs344702	0.96[ASN][1000 genomes]
rs3761735	0.88[ASN][1000 genomes]
rs4146756	0.89[ASN][1000 genomes]
rs55959842	0.86[ASN][1000 genomes]
rs56876261	0.89[ASN][1000 genomes]
rs62350163	0.80[ASN][1000 genomes]
rs62350164	0.84[ASN][1000 genomes]
rs62350168	0.86[ASN][1000 genomes]
rs62350172	0.94[ASN][1000 genomes]
rs62350173	0.95[ASN][1000 genomes]
rs72738271	0.85[ASN][1000 genomes]
rs72738275	0.88[ASN][1000 genomes]
rs72738278	0.93[ASN][1000 genomes]
rs72738279	0.93[ASN][1000 genomes]
rs9312904	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1838286	chr5:16150721-16180167	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1848638	chr5:16150721-16180167	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16158800-16163400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16159000-16159400	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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