Variant report

Variant	rs173178
Chromosome Location	chr5:16147074-16147075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12656071	0.85[ASN][1000 genomes]
rs12658225	0.85[ASN][1000 genomes]
rs1446017	0.89[ASN][1000 genomes]
rs17649190	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17649196	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs2402096	0.85[ASN][1000 genomes]
rs344700	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs344702	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3761735	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs55805585	0.90[ASN][1000 genomes]
rs55959842	0.83[ASN][1000 genomes]
rs62350164	0.82[ASN][1000 genomes]
rs62350168	0.84[ASN][1000 genomes]
rs62350172	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs62350173	0.92[ASN][1000 genomes]
rs72738271	0.83[ASN][1000 genomes]
rs72738275	0.86[ASN][1000 genomes]
rs72738278	0.91[ASN][1000 genomes]
rs72738279	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16140400-16149600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:16141600-16148600	Weak transcription	Left Ventricle	heart
3	chr5:16144600-16148000	Enhancers	Fetal Heart	heart
4	chr5:16146200-16148000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:16146400-16149000	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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