Variant report

Variant	rs72738271
Chromosome Location	chr5:16125321-16125322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:16125040-16125389	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000250981	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10055215	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10064270	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12656071	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658225	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1446017	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs173178	0.83[ASN][1000 genomes]
rs17649190	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17649196	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17649202	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2402096	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs344700	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs344702	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3761735	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4146756	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55805585	0.85[ASN][1000 genomes]
rs55959842	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56876261	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62350163	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62350164	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62350168	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62350172	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62350173	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72738275	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72738278	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72738279	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9312904	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3494749	chr5:16124102-16126500	Weak transcription Enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
3	esv3468868	chr5:16124662-16125601	Strong transcription Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
4	esv3428323	chr5:16124683-16125574	Strong transcription Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
5	esv3494746	chr5:16124705-16125602	Enhancers Strong transcription Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
6	esv3468867	chr5:16124720-16125574	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
7	esv3494747	chr5:16124728-16125534	Strong transcription Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
8	esv3468866	chr5:16124734-16125534	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
9	esv3494748	chr5:16124740-16125541	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
10	nsv471738	chr5:16124796-16125501	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3468869	chr5:16124811-16125492	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv3494750	chr5:16124811-16125492	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv14296	chr5:16124833-16125678	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
14	nsv597293	chr5:16124855-16125503	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
15	nsv597294	chr5:16124855-16125555	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
16	esv3489216	chr5:16124933-16125541	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
17	esv3489217	chr5:16124933-16125541	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16123400-16125400	Weak transcription	Fetal Heart	heart
2	chr5:16124800-16127600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links