Variant report

Variant	rs1447687
Chromosome Location	chr3:134416572-134416573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134415377..134418042-chr3:134431451..134433591,2	K562	blood:
2	chr3:134371420..134374387-chr3:134415571..134417168,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11915953	0.95[EUR][1000 genomes]
rs12630872	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071939	1.00[EUR][1000 genomes]
rs1466078	1.00[EUR][1000 genomes]
rs1466083	1.00[EUR][1000 genomes]
rs1562484	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1562486	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28514359	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4245901	1.00[EUR][1000 genomes]
rs4955445	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4955473	0.95[EUR][1000 genomes]
rs4955475	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57308880	0.95[EUR][1000 genomes]
rs59457762	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59501108	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60499703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695122	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6439513	0.86[EUR][1000 genomes]
rs6439515	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769991	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770549	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784382	0.82[EUR][1000 genomes]
rs6807467	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72978221	1.00[EUR][1000 genomes]
rs72978223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978225	1.00[EUR][1000 genomes]
rs72978227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978266	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978269	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978274	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978284	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978288	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978290	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620383	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621197	0.83[AFR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134410000-134419000	Enhancers	Fetal Muscle Leg	muscle
2	chr3:134411600-134420600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:134412600-134416600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:134413000-134418200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:134413400-134417200	Weak transcription	Right Atrium	heart
6	chr3:134413400-134417400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:134413800-134417000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:134414000-134416600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:134414000-134416800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:134414000-134417000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:134414000-134417000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:134414000-134417400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:134414000-134418000	Enhancers	Fetal Heart	heart
14	chr3:134414600-134417200	Enhancers	Stomach Smooth Muscle	stomach
15	chr3:134415000-134416800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:134415000-134416800	Weak transcription	Esophagus	oesophagus
17	chr3:134415600-134416800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:134415800-134416800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:134416200-134418600	Enhancers	Psoas Muscle	Psoas
20	chr3:134416200-134419000	Enhancers	Left Ventricle	heart
21	chr3:134416400-134416600	Weak transcription	Brain Angular Gyrus	brain
22	chr3:134416400-134418400	Enhancers	Colon Smooth Muscle	Colon
23	chr3:134416400-134418600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:134416400-134419000	Enhancers	Fetal Muscle Trunk	muscle
25	chr3:134416400-134419200	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links