Variant report

Variant	rs6784382
Chromosome Location	chr3:134428128-134428129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52822327..52823055-chr3:134427298..134428185,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11915953	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12630872	0.82[EUR][1000 genomes]
rs13071939	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1447687	0.82[EUR][1000 genomes]
rs1466078	0.82[EUR][1000 genomes]
rs1466083	0.82[EUR][1000 genomes]
rs1562486	0.82[EUR][1000 genomes]
rs1562490	0.82[EUR][1000 genomes]
rs4245901	0.82[EUR][1000 genomes]
rs4455359	1.00[TSI][hapmap]
rs4955445	0.82[EUR][1000 genomes]
rs4955473	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4955475	0.87[EUR][1000 genomes]
rs59457762	0.82[EUR][1000 genomes]
rs59501108	0.82[EUR][1000 genomes]
rs60499703	0.82[EUR][1000 genomes]
rs61179905	0.82[EUR][1000 genomes]
rs61695122	0.82[EUR][1000 genomes]
rs6439513	0.86[AFR][1000 genomes]
rs6439515	0.82[EUR][1000 genomes]
rs6769991	0.82[EUR][1000 genomes]
rs6770549	0.82[EUR][1000 genomes]
rs72978221	0.82[EUR][1000 genomes]
rs72978223	0.82[EUR][1000 genomes]
rs72978225	0.82[EUR][1000 genomes]
rs72978227	0.82[EUR][1000 genomes]
rs72978266	0.82[EUR][1000 genomes]
rs72978269	0.82[EUR][1000 genomes]
rs72978274	0.82[EUR][1000 genomes]
rs72978284	0.82[EUR][1000 genomes]
rs72978288	0.82[EUR][1000 genomes]
rs72978290	0.82[EUR][1000 genomes]
rs7610168	1.00[TSI][hapmap]
rs7620383	0.82[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6784382	EPHB1	cis	lymphoblastoid	seeQTL
rs6784382	SIRPG	trans	lymphoblastoid	seeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134418600-134428800	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:134419800-134432200	Weak transcription	Esophagus	oesophagus
3	chr3:134426200-134430800	Enhancers	Osteobl	bone
4	chr3:134426400-134429000	Enhancers	HUVEC	blood vessel
5	chr3:134426400-134430400	Enhancers	Fetal Muscle Leg	muscle
6	chr3:134426600-134429200	Enhancers	HSMM	muscle
7	chr3:134426600-134429600	Enhancers	NH-A	brain
8	chr3:134426600-134430600	Enhancers	NHDF-Ad	bronchial
9	chr3:134426800-134428400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:134426800-134429400	Enhancers	Psoas Muscle	Psoas
11	chr3:134426800-134430400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:134426800-134430600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:134427400-134428400	Enhancers	Stomach Smooth Muscle	stomach
14	chr3:134427400-134429600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:134427400-134430600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:134427600-134428200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:134427600-134429200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:134427600-134429600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr3:134427800-134428200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:134427800-134428800	Weak transcription	NHLF	lung
21	chr3:134427800-134429200	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:134427800-134433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:134428000-134429000	Enhancers	Fetal Heart	heart
24	chr3:134428000-134429200	Enhancers	Fetal Stomach	stomach
25	chr3:134428000-134429200	Enhancers	Left Ventricle	heart
26	chr3:134428000-134429200	Enhancers	Ovary	ovary
27	chr3:134428000-134429200	Enhancers	Right Atrium	heart
28	chr3:134428000-134429200	Enhancers	HSMMtube	muscle
29	chr3:134428000-134429400	Enhancers	Duodenum Smooth Muscle	Duodenum

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