Variant report

Variant	rs72978227
Chromosome Location	chr3:134412470-134412471
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11915953	0.95[EUR][1000 genomes]
rs12630872	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13071939	1.00[EUR][1000 genomes]
rs1447687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1466078	1.00[EUR][1000 genomes]
rs1466083	1.00[EUR][1000 genomes]
rs1562484	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1562486	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1562490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28514359	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4245901	1.00[EUR][1000 genomes]
rs4955445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4955473	0.95[EUR][1000 genomes]
rs4955475	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57308880	0.95[EUR][1000 genomes]
rs59457762	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59501108	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60499703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61179905	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695122	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6439513	0.86[EUR][1000 genomes]
rs6439515	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6769991	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770549	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6784382	0.82[EUR][1000 genomes]
rs6807467	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72978221	1.00[EUR][1000 genomes]
rs72978223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978225	1.00[EUR][1000 genomes]
rs72978266	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978269	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978274	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978284	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978288	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72978290	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7620383	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621197	0.81[AFR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134400400-134412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:134405800-134412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:134407600-134416200	Weak transcription	Psoas Muscle	Psoas
4	chr3:134407800-134412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:134409200-134412800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:134409400-134412800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:134410000-134419000	Enhancers	Fetal Muscle Leg	muscle
8	chr3:134411600-134420600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:134411800-134413200	Bivalent Enhancer	Fetal Stomach	stomach
10	chr3:134411800-134413200	Enhancers	Stomach Smooth Muscle	stomach
11	chr3:134411800-134413400	Enhancers	Fetal Heart	heart
12	chr3:134412000-134413000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:134412000-134413000	Enhancers	Osteobl	bone
14	chr3:134412000-134414000	Enhancers	Brain Anterior Caudate	brain
15	chr3:134412000-134414200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:134412200-134414000	Enhancers	Brain Hippocampus Middle	brain
17	chr3:134412400-134413800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr3:134412400-134414000	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links