Variant report

Variant	rs1449268
Chromosome Location	chr15:73231992-73231993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1466112	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957452	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs58946653	1.00[EUR][1000 genomes]
rs59998173	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73434008	1.00[ASN][1000 genomes]
rs74021561	0.83[ASN][1000 genomes]
rs74021564	0.83[ASN][1000 genomes]
rs74021567	0.83[ASN][1000 genomes]
rs8025131	0.83[ASN][1000 genomes]
rs8037273	0.83[ASN][1000 genomes]
rs8042891	0.83[ASN][1000 genomes]
rs895905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73229400-73238200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:73231000-73233000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr15:73231200-73232800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:73231200-73233600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73231400-73232400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:73231400-73232800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr15:73231400-73232800	Enhancers	Fetal Brain Male	brain
8	chr15:73231600-73236600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:73231800-73233000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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