Variant report

Variant	rs74021564
Chromosome Location	chr15:73204208-73204209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1449268	0.83[ASN][1000 genomes]
rs16957438	0.89[AMR][1000 genomes]
rs16957442	0.89[AMR][1000 genomes]
rs16957448	0.89[AMR][1000 genomes]
rs16957452	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6495028	0.89[AMR][1000 genomes]
rs7161776	0.89[AMR][1000 genomes]
rs7171931	0.89[AMR][1000 genomes]
rs7172601	0.89[AMR][1000 genomes]
rs73434008	0.83[ASN][1000 genomes]
rs74021561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74021567	1.00[ASN][1000 genomes]
rs8024677	0.89[AMR][1000 genomes]
rs8025131	1.00[ASN][1000 genomes]
rs8037273	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8042891	1.00[ASN][1000 genomes]
rs895905	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73201600-73204600	Weak transcription	Fetal Stomach	stomach
2	chr15:73203800-73204600	Enhancers	Duodenum Mucosa	Duodenum
3	chr15:73204000-73204800	Enhancers	Fetal Intestine Large	intestine
4	chr15:73204000-73204800	Enhancers	Fetal Intestine Small	intestine
5	chr15:73204000-73204800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:73204000-73205600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr15:73204200-73205600	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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