Variant report

Variant	rs16957438
Chromosome Location	chr15:73193406-73193407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16957442	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957452	1.00[AMR][1000 genomes]
rs59288279	0.89[AMR][1000 genomes]
rs6495028	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161776	1.00[AMR][1000 genomes]
rs7171931	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7172601	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74021561	0.89[AMR][1000 genomes]
rs74021564	0.89[AMR][1000 genomes]
rs8024677	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037273	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16957438	CCND3	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73190400-73194000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:73192000-73193800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:73193200-73194800	Enhancers	Aorta	Aorta
4	chr15:73193400-73194600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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