Variant report

Variant	rs7172601
Chromosome Location	chr15:73199148-73199149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16957438	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957442	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957448	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16957452	1.00[AMR][1000 genomes]
rs59288279	0.89[AMR][1000 genomes]
rs6495028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7161776	1.00[AMR][1000 genomes]
rs7171931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74021561	0.89[AMR][1000 genomes]
rs74021564	0.89[AMR][1000 genomes]
rs8024677	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037273	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73195400-73200000	Weak transcription	Fetal Lung	lung
2	chr15:73195600-73199800	Weak transcription	Fetal Intestine Small	intestine
3	chr15:73195600-73200000	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:73195600-73200000	Weak transcription	Ovary	ovary
5	chr15:73197400-73200000	Weak transcription	Fetal Intestine Large	intestine
6	chr15:73198000-73199800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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