Variant report

Variant	rs1453126
Chromosome Location	chr2:7215657-7215658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1453125	0.90[EUR][1000 genomes]
rs309261	0.90[EUR][1000 genomes]
rs309262	0.90[EUR][1000 genomes]
rs309265	0.90[EUR][1000 genomes]
rs309266	0.86[EUR][1000 genomes]
rs309271	0.85[EUR][1000 genomes]
rs309272	0.85[EUR][1000 genomes]
rs309274	0.85[EUR][1000 genomes]
rs309275	0.84[EUR][1000 genomes]
rs309277	0.83[EUR][1000 genomes]
rs309279	0.82[EUR][1000 genomes]
rs309280	0.83[EUR][1000 genomes]
rs309281	0.83[EUR][1000 genomes]
rs309285	0.82[EUR][1000 genomes]
rs309301	0.91[EUR][1000 genomes]
rs6716921	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7584146	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
2	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:7203000-7217600	Weak transcription	Adipose Nuclei	Adipose
4	chr2:7204400-7218600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr2:7209400-7218600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr2:7211400-7217000	Weak transcription	Right Ventricle	heart
7	chr2:7211800-7224000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:7213400-7218800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:7214200-7230000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:7214400-7234000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:7214800-7218600	Strong transcription	Primary T cells from cord blood	blood
12	chr2:7215200-7216000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:7215200-7216400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:7215400-7216200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr2:7215600-7216000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr2:7215600-7217200	Strong transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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